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Whole genome sequence analysis of lab-adapted Bacillus subtilis strains implies strain evolution in 40 years
Date
2018-10-10
Author
Özcengiz, Gülay
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https://hdl.handle.net/11511/81239
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Whole genome sequencing of Turkish genomes reveals functional private alleles and impact of genetic interactions with Europe, Asia and Africa
Gokcumen, Omer; Alkan, Can; Kavak, Pinar; Somel, Mehmet; Ugurlu, Serkan; Dal, Elif; Bugra-Bilge, Kuyas; Gungor, Tunga; Sahinalp, Cenk; Ozeren, Nesrin; Bekpen, Cemalettin (2014-03-01)
Background: Turkey is a crossroads of major population movements throughout history and has been a hotspot of cultural interactions. Several studies have investigated the complex population history of Turkey through a limited set of genetic markers. However, to date, there have been no studies to assess the genetic variation at the whole genome level using whole genome sequencing. Here, we present whole genome sequences of 16 Turkish individuals resequenced at high coverage (32 × −48×). Results: We show tha...
Whole genome sequencing of Turkish genomes reveals functional private alleles and impact of genetic interactions with Europe, Asia and Africa
Alkan, Can; Kavak, Pinar; Somel, Mehmet; Gokcumen, Omer; Ugurlu, Serkan; Saygi, Ceren; Dal, Elif; Bugra, Kuyas; GÜNGÖR, TUNGA; Sahinalp, S. Cenk; ÖZÖREN, NESRİN; BEKPEN, CEMALETTİN (2014-11-07)
Background: Turkey is a crossroads of major population movements throughout history and has been a hotspot of cultural interactions. Several studies have investigated the complex population history of Turkey through a limited set of genetic markers. However, to date, there have been no studies to assess the genetic variation at the whole genome level using whole genome sequencing. Here, we present whole genome sequences of 16 Turkish individuals resequenced at high coverage (32 x -48x).
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Real-time PCR analysis of pyrethroid resistance in Helicoverpa armigera from Turkey
Konuş, Metin; UGURLU KARAAĞAÇ, SAKİNE; İşcan, Mesude (2014-01-01)
Aim: Helicoverpa armigera (Hubner) (Lepidoptera: Noctuidae) is a polyphagous pest of a wide range of crops such as cotton, tomato and soybean. Pyrethroid insecticides have commonly used against it in agricultural areas, but excess amount applications of them result in resistance development in the field populations of H. armigera. Resistance development usually occurs with increased metabolism of certain enzymatic systems such as CYP450, GST and esterases. Therefore, expressions of selected CYP450, GST and ...
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Microbial whole-cell bioreporters have been developed for environmental monitoring of arsenic contamination. Despite the great interest in bacterial bioreporters for arsenite detection, relatively few studies reported their response to arsenate levels. In this study, green fluorescent protein-based whole-cell Escherichia coli bioreporter was constructed for the measurement of both bioavailable arsenite and arsenate in water. The developed bacterial bioreporter has much higher sensitivity toward arsenate in ...
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G. Özcengiz, “Whole genome sequence analysis of lab-adapted Bacillus subtilis strains implies strain evolution in 40 years,” 2018, Accessed: 00, 2021. [Online]. Available: https://hdl.handle.net/11511/81239.