Ahmet Atakan

E-mail

atakan@metu.edu.tr

Department

Graduate School of Natural and Applied Sciences

Scopus Author ID

22974362300

Transfer learning for drug–target interaction prediction Dalkıran, Alperen; Atakan, Ahmet; Rifaioğlu, Ahmet Süreyya; Martin, Maria J; Çetin Atalay, Rengül; Acar, Aybar Can; Doğan, Tunca; Atalay, Mehmet Volkan (2023-06-01) MotivationUtilizing AI-driven approaches for drug–target interaction (DTI) prediction require large volumes of training data which are not available for the majority of target proteins. In this study, we investigate the us...
ProFAB-open protein functional annotation benchmark Ozdilek, A. Samet; Atakan, Ahmet; Ozsari, Goekhan; Acar, Aybar; Atalay, Mustafa Ümit; DOĞAN, TUNCA; RİFAİOĞLU, AHMET SÜREYYA (2023-02-01) As the number of protein sequences increases in biological databases, computational methods are required to provide accurate functional annotation with high coverage. Although several machine learning methods have been pro...
SLPred: a multi-view subcellular localization prediction tool for multi-location human proteins Özsarı, Gökhan; Rifaioglu, Ahmet Sureyya; Atakan, Ahmet; DOĞAN, TUNCA; Martin, Maria Jesus; Atalay, Rengul Cetin; Atalay, Mehmet Volkan (2022-09-01) Accurate prediction of the subcellular locations (SLs) of proteins is a critical topic in protein science. In this study, we present SLPred, an ensemble-based multi-view and multi-label protein subcellular localization pre...
Data Centric Molecular Analysis and Evaluation of Hepatocellular Carcinoma Therapeutics Using Machine Intelligence-Based Tools Cetin-Atalay, Rengul; Kahraman, Deniz Cansen; Sinoplu, Esra; RİFAİOĞLU, AHMET SÜREYYA; Atakan, Ahmet; Dönmez, Ataberk; Atas, Heval; Atalay, Mehmet Volkan; Acar, Aybar C.; DOĞAN, TUNCA (2021-12-01) Purpose Computational approaches have been used at different stages of drug development with the purpose of decreasing the time and cost of conventional experimental procedures. Lately, techniques mainly developed and appl...
CROssBAR: comprehensive resource of biomedical relations with knowledge graph representations DOĞAN, TUNCA; Atas, Heval; Joshi, Vishal; Atakan, Ahmet; Rifaioglu, Ahmet Sureyya; Sinoplu, Esra; Nightingale, Andrew; Saidi, Rabie; Volynkin, Vladimir; Zellner, Hermann; Cetin-Atalay, Rengul; Martin, Maria; Atalay, Volkan (2021-09-01) Systemic analysis of available large-scale biological/biomedical data is critical for studying biological mechanisms, and developing novel and effective treatment approaches against diseases. However, different layers of t...
An algorithm for line matching in an image by mapping into an n-dimensional vector space Sultanov, Raiymbek; Atakan, Ahmet; Ismailova, Rita (2019-01-01) This paper proposes a minimal length difference algorithm for construction of a line in an image by solving the problem of optimal contour approximation. In this algorithm, a method for finding interest points is proposed,...

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