ECPred: An Automated Enzymatic Function Prediction Tool Based on Combination of Different Classifiers

Date

2017-05-10

Author

Dalkıran, Alperen
Rifaioğlu, Ahmet Süreyya
Doğan, Tunca
Atalay, Mehmet Volkan
Martin, Maria Jesus
Atalay, Rengül

Metadata

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URI

https://www.iscb.org/glbio2017
https://hdl.handle.net/11511/72130

Conference Name

GLBIO 2017: Great Lakes Bioinformatics Conference (15 - 17 Mayıs 2017)

Collections

Department of Computer Engineering, Conference / Seminar

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ECPred: a tool for the prediction of the enzymatic functions of protein sequences based on the EC nomenclature Dalkıran, Alperen; Rifaioğlu, Ahmet Süreyya; Dogan, Tunca; Atalay, Mehmet Volkan (2018-09-21) Background: The automated prediction of the enzymatic functions of uncharacterized proteins is a crucial topic in bioinformatics. Although several methods and tools have been proposed to classify enzymes, most of these studies are limited to specific functional classes and levels of the Enzyme Commission (EC) number hierarchy. Besides, most of the previous methods incorporated only a single input feature type, which limits the applicability to the wide functional space. Here, we proposed a novel enzymatic f...
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EClerize: A Customized Force-Directed Layout Algorithm for Biological Networks with EC Attributes Danacı, Hasan Fehmi; Atalay, Rengül; Atalay, Mehmet Volkan (null; 2017-05-10)
ECAP processing and mechanical milling of Mg and Mg-Ti powders: a comparative study Cakmak, Gulhan; Öztürk, Tayfur (2011-08-01) A study was carried out into the possibility of employing ECAP processing in lieu of mechanical milling for the purpose of developing powder-based hydrogen storage alloys. Mg and Mg-Ti powder compacts were encapsulated in a copper block and were subjected to ECAP deformation to an apparent strain of epsilon = 4. This resulted in the consolidation of the compacts as well as in the refinement of their structures. The values of coherently diffracting volume size were as small as 70-80 nm, quite comparable to t...
SCPAT: a MATLAB-based toolbox for analysing swath characteristic profiles Bavil, Alireza Yousefi; Bavil, Karim Yousefi (Springer Science and Business Media LLC, 2019-05-01) Swath profiling is a method of representing three-dimensional datasets on two-dimensional diagrams. However, there are common restrictions in the handling of datasets: the calculation of only statistical parameters such as maximum or mean that display variations parallel to the scan line in swath profiles (hereafter, non-positional parameters), difficulty in analysing a given parameter over a specific range of a swath profile, and exporting the results. The restrictions are mainly because tools developed fo...

Citation Formats

A. Dalkıran, A. S. Rifaioğlu, T. Doğan, M. V. Atalay, M. J. Martin, and R. Atalay, “ECPred: An Automated Enzymatic Function Prediction Tool Based on Combination of Different Classifiers,” presented at the GLBIO 2017: Great Lakes Bioinformatics Conference (15 - 17 Mayıs 2017), Şikago, Amerika Birleşik Devletleri, 2017, Accessed: 00, 2021. [Online]. Available: https://www.iscb.org/glbio2017.