Structural proteome scale prediction of protein protein interactions using interfaces

Tunçbağ, Nurcan
Keskin Özkaya, Zehra Özlem
Nussınov, Ruth


Structural and functional evaluation mammalian and plant lipoxygenases upon association with nanodics as membrane mimetics.
Ulusan, Sinem; Sheraj, Ilir; Stehling, Sabine; Ivanov, Igor; Das, Aditi; Kühn, Hartmut; Banerjee, Sreeparna (2022-07-08)
Structural and molecular electronic properties of B-N ring doped single-wall carbon nanotubes
Malcıoğlu, Osman Barış; Erkoc, A (Elsevier BV, 2005-08-01)
Various molecular electronic properties of boron-nitride nanotube ring doped four different single-wall carbon nanotubes are investigated theoretically by performing self-consistent-field molecular-orbital semi-empirical and density functional theory calculations. Results are compared with corresponding carbon nanotubes. It is seen that polar nature of the boron-nitride nanotube ring lead to a spontaneous polarization, an electrostatic potential barrier occurs in metallic carbon nanotube models, and these m...
Structural and functional characterization of the CXXC-type zinc finger protein 5 (CXXC5)
Ayaz Şen, Gamze; Muyan, Mesut; Department of Biology (2018)
Estrogen hormones, particularly 17β-estradiol (E2), are involved in the regulation of physiological and pathophysiological functions of many organs and tissues including breast tissue. The expression of CXXC type zinc finger protein 5 (CXXC5) gene is regulated by E2 through estrogen receptor α. Due to a highly conserved zinc-finger CXXC domain (ZF-CXXC), CXXC5 is considered to be a member of ZF-CXXC family, which binds to non-methylated CpG dinucleotides of transcriptionally active DNA regions. This binding...
Structural and thermal characterization of PTSA doped polypyrrole-polytetrahydrofuran graft copolymer
Özdilek, Ceren; Hacaloğlu, Jale; Toppare, Levent Kamil; Yagč, Yusuf (2004-01-06)
The thermal degradation processes of p-toluene sulfonate (PTS) doped polypyrrole (PPY) grown from the pyrrole moiety located at both the ends of polytetrahydrofuran (PTHF) have been studied by direct pyrolysis mass spectrometry (DPMS) to gain structural information. To get a better insight, pyrolysis analysis on corresponding homopolymers, PTHF and PPY, have also been carried out. The DPMS data were in accordance with TGA results indicating a significant decrease in thermal stability of the copolymer with r...
Structural and electronic properties of defected carbon nanocapsules
Pekoez, Rengin; Erkoç, Şakir (2007-06-01)
Structural and electronic properties of defected carbon nanocapsule systems have been investigated theoretically by performing semi-empirical molecular orbital and density functional theory methods. Geometries of the structures have been optimized by applying PM3 level of calculations within restricted Hartree Fock formalism and electronic information have been obtained by applying B3LYP level of density functional theory calculation using 3-21G basis set. The studied systems include (5,5) and (9,0) single-...
Citation Formats
N. Tunçbağ, Z. Ö. Keskin Özkaya, and R. Nussınov, “Structural proteome scale prediction of protein protein interactions using interfaces,” 2011, Accessed: 00, 2021. [Online]. Available: