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Recent Submissions

Low-dose natural clay Kaolin promotes the growth of submerged macrophytes and alters the rhizosphere microorganism community: Implications for lake restoration Sun, Shangsheng; Chou, Qingchuan; Ding, Qi; Su, Yuqing; Su, Haojie; Jeppesen, Erik; Wang, Liqing; Zhang, Wei (2025-08-01) Sediment properties have a crucial effect on the growth and recovery of aquatic plants in lakes. Addition of various chemical substances has been proposed to reinforce the recovery of plants after a nutrient loading reduct...
Response of the submerged macrophyte Stuckenia pectinata (L.) Börner to warming in different climate regions: A synchronized oligohaline mesocosm experiment Billah, Md Masum; Yılmaz, Gültekin; Alves Amorım, Cıhelıo; Kuyumcu, Meltem; Arıkan, Onat; KORKMAZ, MUSTAFA; Arık, İrem Gamze; Beklioğlu, Meryem; Jeppesen, Erik; Özkan, Korhan (2025-05-01) Submerged macrophytes play a crucial role as primary producers and contribute essential ecosystem functions and services, but rising temperatures caused by climate change may alter their functional traits. We aimed to asse...
Environmental controls on the conversion of nutrients to chlorophyll in lakes Naderian, Danial; Noori, Roohollah; Kim, Dongkyun; Jun, Changhyun; Bateni, Sayed M.; Woolway, R. Iestyn; Sharma, Sapna; Shi, Kun; Qin, Boqiang; Zhang, Yunlin; Jeppesen, Erik; Maberly, Stephen C. (2025-04-15) Anthropogenic inputs of nitrogen and phosphorus to lakes have increased worldwide, causing phytoplankton chlorophyll concentrations to increase at many sites, with negative implications for biodiversity and human usage of ...
Inflow-modulated inputs of dissolved organic matter fuel carbon dioxide emissions from a large hyper-eutrophic lake Qian, Mingrui; Zhou, Yongqiang; Zhou, Lei; Zhang, Yunlin; Pu, Yang; Drake, Travis W.; Davidson, Thomas A.; Spencer, Robert G.M.; Brookes, Justin D.; Jeppesen, Erik (2025-04-01) Terrestrial dissolved organic matter (DOM) is potentially reactive and, upon entering lake ecosystems, can be readily degraded to low-molecular-weight organic matter and dissolved CO2. However, to date, there has been limi...
Influences of dissolved organic matter on phytoplankton functional diversity and resource use efficiency differ in three lakes with contrasting trophic state and depth Yu, Zhirong; Song, Di; Li, Jingyi; Zhang, Hucai; Qin, Jiang; Song, Lirong; Jeppesen, Erik; Zhou, Qichao (2025-04-01) Dissolved organic matter (DOM) plays a crucial role in both the penetration of light underwater and the biogeochemical cycles of carbon and nutrients in lakes, thereby largely influencing phytoplankton community structure ...
Prokaryotic and eukaryotic periphyton responses to warming, nutrient enrichment and small omnivorous fish: A shallow lake mesocosms experiment Yang, Han; Cao, Yu; Zhang, Wei; Pacheco, Juan Pablo; Liu, Tong; Zheng, Yaqi; Jeppesen, Erik; Wang, Liqing (2025-03-15) Global change stressors, including climate warming, eutrophication, and small-sized omnivorous fish, may exert interactive effects on the food webs and functioning of shallow lakes. Periphyton plays a central role in the p...
Leaf metabolomic traits decipher the invasiveness of Alternanthera philoxeroides in urban wetlands Huang, Xiaolong; Yang, Jinming; Yang, Xue; Wang, Tong; Meng, Jie; Guo, Xiao; Wang, Yang; Xiong, Wen; Zeng, Jin; Wu, Zhaoshi; Li, Kuanyi; Jeppesen, Erik (2025-03-10) Urbanisation has been considered to promote exotic plant invasion. Ecophysiology predicts phenotypic variation and potential evolution following urbanisation and can be used to evaluate plant invasiveness. However, few stu...
A phase I/II study of CpG/alum-adjuvanted mammalian-derived quadruple antigen carrying virus-like particle COVID-19 vaccine Yilmaz, Ismail Cem; İpekoğlu, Emre Mert; Golcuklu, Berfu Saraydar; Bildik, Tugce; Aksoy, Aslı Gulce Bartan; Evcili, Irem; Turay, Nilsu; Surucu, Naz; Bulbul, Artun; Guvencli, Nese; Yildirim, Muzaffer; Canavar Yildirim, Tugce; Atalay, Yagmur Aydin; Abras, Irem; Ceylan, Yasemin; Ozsurekci, Yasemin; Tigen, Elif Tukenmez; Korten, Volkan; Gürsel, Mayda; Gursel, Ihsan (2025-03-07) Background: Waning Spike-elicited immunity and emerging COVID-19 variants underscore the need for vaccines leveraging multiple SARS-CoV-2 antigens, rapidly adaptable to evolving strains. Herein, we evaluated the safety and...
Lateglacial and Holocene hydroclimatic variability documented by Cladocera of Tolbo Lake in the Altai Mountains, western Mongolia Li, Yuan; Liu, Xingxing; Wang, Wenjia; Xiang, Lixiong; Hu, Yu; Jeppesen, Erik; Demberel, Otgonbayar; Zolbayar, Jargalsaikhan; Huang, Xiaozhong (2025-03-01) The Altai Mountains contain rivers, lakes, and glaciers critical for the survival of both social and ecological systems. Reconstructing past hydroclimatic changes is crucial for understanding human-environment interactions...
“A Network of Mutualities of Being”: Socio-material Archaeological Networks and Biological Ties at Çatalhöyük Mazzucato, Camilla; Coscia, Michele; Küçükakdağ Doğu, Ayça; Haddow, Scott; Kılıç, Muhammed Sıddık; YÜNCÜ, EREN; Somel, Mehmet (2025-03-01) Recent advances in archaeogenomics have granted access to previously unavailable biological information with the potential to further our understanding of past social dynamics at a range of scales. However, to properly int...
A reappraisal of cell cycle phase enrichment in synchronized estrogen receptor-positive cell models derived from breast adenocarcinomas Toker, Pelin; Ayten, Hazal; Demiralay, Öykü Deniz; Bınarcı, Büşra; Turan, Gizem; Olgun, Çağla Ece; Yaşar, Pelin; Akman, Hesna Begüm; Muyan, Mesut (2025-02-18) 17β-estradiol (E2), the main circulating estrogen hormone, is a critical signaling factor for the growth, differentiation, and function of breast epithelial cells. The effects of E2 on the breast tissue are primarily media...
Pro-Opiomelanocortin and Melanocortin Receptor 3 and 4 Mutations in Genetic Obesity Yanık, Tülin; Durhan, Seyda Tugce (2025-02-01) Genetic obesity results from loss-of-function mutations, including those affecting the leptin–melanocortin system, which regulates body weight. Pro-opiomelanocortin (POMC)-derived neurohormones act as ligands for melanocor...
Dissolved organic carbon can alter coastal sediment phosphorus dynamic: Effects of different carbon forms and concentrations Ma, Shuo-Nan; Dong, Xu-Meng; Xu, Ji-Lin; Zhao, Chun-Pu; Liu, Miao; Wang, Hai-Jun; Jeppesen, Erik (2025-02-01) Coastal waters are receiving increasing loads of dissolved organic carbon (DOC), differing in structural complexity and molecular weights with potential different effects on the phosphorus (P) dynamics in these waters. Thi...
Pre-processing of paleogenomes: mitigating reference bias and postmortem damage in ancient genome data Koptekin, Dilek; Yapar, Etka; Vural, Kıvılcım Başak; Sağlıcan, Ekin; ALTINIŞIK, NEFİZE EZGİ; Malaspinas, Anna-Sapfo; Alkan, Can; Somel, Mehmet (2025-01-09) We investigate alternative strategies against reference bias and postmortem damage in low coverage paleogenomes. Compared to alignment to the linear reference genome, we show that masking known polymorphic sites and graph ...
Global trends and regime state shifts of lacustrine aquatic vegetation Luo, Juhua; Duan, Hongtao; Xu, Ying; Shen, Ming; Zhang, Yunlin; Xiao, Qitao; Ni, Guigao; Wang, Kang; Xin, Yihao; Qi, Tianci; Feng, Lian; Qiu, Yinguo; Jeppesen, Erik; Woolway, R. Iestyn (2025-01-01) Aquatic vegetation (AV) is vital for maintaining the health of lake ecosystems, with submerged aquatic vegetation (SAV) and floating/emergent aquatic vegetation (FEAV) representing clear and shaded states, respectively. Ho...
Rare fish species in European lakes – patterns and processes Mehner, Thomas; Argillier, Christine; Ferreira, Teresa; Holmgren, Kerstin; Jeppesen, Erik; Kelly, Fiona; Krause, Teet; Olin, Mikko; Volta, Pietro; Winfield, Ian J.; Brucet, Sandra (2025-01-01) According to differences in life history and species niches, community assembly processes are predicted to differ between common and rare species. While neutral processes, in particular dispersal, should contribute strongl...
Real-Time Monitoring of Dissolved Oxygen Using a Novel Ground-Based Hyperspectral Proximal Sensing System Luo, Xiayang; Li, Na; Zhang, Yunlin; Zhang, Yibo; Shi, Kun; Qin, Boqiang; Zhu, Guangwei; Jeppesen, Erik; Brookes, Justin D.; Sun, Xiao (2025-01-01) High-frequency and high-precision dissolved oxygen (DO) monitoring is essential for lake health assessment, but it is limited by equipment and methods. This study developed a novel ground-based hyperspectral proximal sensi...
Addressing grand ecological challenges in aquatic ecosystems: how can mesocosms be used to advance solutions? Macaulay, Samuel J.; et. al. (2025-01-01) Rapid and drastic anthropogenic impacts are affecting global biogeochemical processes and driving biodiversity loss across Earth's ecosystems. In aquatic ecosystems, species distributions are shifting, abundances of many s...
Experimental evidence of the role of nitrogen for eutrophication in shallow lakes: A long-term climate effect mesocosm study Jeppesen, Erik; He, Hu; Søndergaard, Martin; Lauridsen, Torben L.; Davidson, Thomas A.; Levi, Eti E.; McCarthy, Mark J. (2025-01-01) The effectiveness of controlling nitrogen (N) loading (in addition to phosphorus [P]) to manage the eutrophication of aquatic ecosystems has been debated despite the role of N in producing algal biomass and toxins. Long-te...
Comparison of the impact of native and invasive omnivorous fish on plankton and benthic algae communities, water quality, and submerged macrophytes Razlutskij, Vladimir; Mei, Xueying; Tang, Yali; Maisak, Natallia; Karpaeva, Anastasiya; Goncharik, Ruslan G.; Jeppesen, Erik; Zhang, Xiufeng (2025-01-01) Shallow lakes are often rich in submerged macrophytes that play an important role in the functioning of shallow lake ecosystems. Omnivorous fish can intensify eutrophication by enhancing the growth of phytoplankton, leadin...

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