The relationship between genetic and shape variation in endemic and endangered freshwater fish species pseudophoxinus

Download
2008
Telli, Murat
Evolutionary models addressing interaction between genetics and morphology propose that during development, morphological traits of organisms are under canalization selection resulting in constancy in morphology through evolutionary time. The hypothesis of genetic homeostasis predict that because of developmental buffering effects of heterosis, high level heterozygosity results in low level of morphological variance from the norms of canalized shape of the population. The aim of the present study is to test whether the variation in shape of organisms is negatively correlated with genetic variation in Pseudophoxinus populations. Sample collection was performed from eight localities for four different Pseudophoxinus species (P. crassus, P. battalgili, P. egridiri, P. sp) in Central and South Anatolia in summer period of 2006. Shape variation of the specimens was determined using geometric morphometric methods. Genetic variation was based on six microsatellite and ten allozyme loci. All the microsatellite loci were found to be polymorphic. However, the percentage of monomorphic locus for allozymes varied from 90% to 60% per population. Statistically significant negative correlation was observed between shape and genetic variation derived from microsatellite data. However, this was not the case for allozyme heterozygosity; there wasn’t any significant relationship between shape variation and allozymes heterozygosity. Low number of polymorphic loci observed in allozymes may prevent to reveal possible relationship between shape and genetic variations. As a result, the present study confirmed the hypothesis of genetic homeostasis for microsatellite data.

Suggestions

Evolution of Primate Gene Expression: Drift and Corrective Sweeps?
Chaix, R.; Somel, Mehmet; Kreil, D. P.; Khaitovich, P.; Lunter, G. A. (Genetics Society of America, 2008-11-01)
Changes in gene expression play an important: role in species' evolution. Earlier studies uncovered evidence that the effect of mutations on expression levels within the primate order is skewed, with many small downregulations balanced by fewer but larger upregulations. In addition, brain-expressed genes appeared to show an increased rate of evolution on the branch leading to human. However, the lack of a mathematical model adequately describing the evolution of gene expression precluded the rigorous establ...
Identification and analysis of genomic regions with large between-population differentiation in humans
Myles, S.; Tang, K.; Somel, Mehmet; Green, R. E.; Kelso, J.; Stoneking, M. (Wiley, 2008-01-01)
The primary aim of genetic association and linkage studies is to identify genetic variants that contribute to phenotypic variation within human populations. Since the overwhelming majority of human genetic variation is found within populations, these methods are expected to be effective and can likely be extrapolated from one human population to another. However, they may lack power in detecting the genetic variants that contribute to phenotypes that differ greatly between human populations. Phenotypes that...
Evolution of Neuronal and Endothelial Transcriptomes in Primates
Giger, Thomas; Khaitovich, Philipp; Somel, Mehmet; Lorenc, Anna; Lizano, Esther; Harris, Laura W.; Ryan, Margaret M.; Lan, Martin; Wayland, Matthew T.; Bahn, Sabine; Paeaebo, Svante (Oxford University Press (OUP), 2010-01-01)
The study of gene expression evolution in vertebrates has hitherto focused on the analysis of transcriptomes in tissues of different species. However, because a tissue is made up of different cell types, and cell types differ with respect to their transcriptomes, the analysis of tissues offers a composite picture of transcriptome evolution. The isolation of individual cells from tissue sections opens up the opportunity to study gene expression evolution at the cell type level. We have stained neurons and en...
Mining microarray data for biologically important gene sets
Korkmaz, Gülberal Kırçiçeği Yoksul; Atalay, Mehmet Volkan; Department of Computer Engineering (2012)
Microarray technology enables researchers to measure the expression levels of thousands of genes simultaneously to understand relationships between genes, extract pathways, and in general understand a diverse amount of biological processes such as diseases and cell cycles. While microarrays provide the great opportunity of revealing information about biological processes, it is a challenging task to mine the huge amount of information contained in the microarray datasets. Generally, since an accurate model ...
The phylogenetic analysis of pinus nigra arnold subspecies pallasiana varieties with respect to non-coding trn regions of chloroplast genome
Güvendiren Gülsoy, Aysun Demet; Kaya, Zeki; Department of Biology (2009)
More than half of the Pinaceae is including in genus Pinus covers the large parts of vegetation of northern hemisphere. The Anatolian Black Pine is one of the subspecies of European Black Pine, growing naturally as a widespread mid elevation species of Taurus, western Anatolian and northern Anatolian Mountains of Turkey. Although it is disputed that there are 5 varieties of Anatolian black pine but three of these are well recognized. These are Pinus nigra subsp. pallasiana var. pallasiana, Pinus nigra Arnol...
Citation Formats
M. Telli, “The relationship between genetic and shape variation in endemic and endangered freshwater fish species pseudophoxinus,” Ph.D. - Doctoral Program, Middle East Technical University, 2008.