Genome Editing for Nutrient Use Efficiency in Crops

Naeem, Muhammad
Aksoy, Emre


Genome-wide variation analysis of formalin fixed paraffin embedded pulmonary metastatic tumor samples of osteosarcoma patients
Nil, Zelha; Gündüz, Ufuk; Department of Biology (2012)
Osteosarcoma (OS) is a type of cancer that starts in the bone. It generally occurs in the cells called osteoblasts which form matrix of the bone. It is the most common malignant tumor of bone with an incidence rate of 19% among all cancer types. The vast majority of OS patients have pulmonary metastases at the time they are diagnosed, and about half develop lung disease later. Moreover, pulmonary metastatic tumors lead to poor prognosis and increased death rate. Although mutations in the genes coding for p5...
Genome-wide exploration of metal tolerance protein (MTP) genes in common wheat (Triticum aestivum): insights into metal homeostasis and biofortification
Vatansever, Recep; Filiz, Ertugrul; Eroğlu, Seçkin (2017-04-01)
Metal transport process in plants is a determinant of quality and quantity of the harvest. Although it is among the most important of staple crops, knowledge about genes that encode for membrane-bound metal transporters is scarce in wheat. Metal tolerance proteins (MTPs) are involved in trace metal homeostasis at the sub-cellular level, usually by providing metal efflux out of the cytosol. Here, by using various bioinformatics approaches, genes that encode for MTPs in the hexaploid wheat genome (Triticum ae...
Genome-wide Identification and Expression of CALCIUM/CALMODULIN-BINDING TRANSCRIPTIONAL ACTIVATOR (CAMTA) Gene Family in Arabidopsis thaliana under Abiotic Stresses
ATEŞ, DİLAN; YERLİKAYA, BAYRAM ALİ; Aksoy, Emre (2019-09-11)
Genome analysis of antimicrobial resistance, virulence, and plasmid presence in Turkish Salmonella serovar Infantis isolates
Acar, Sinem; Bulut, Ece; Stasiewicz, Matthew J.; Soyer, Yeşim (2019-10-16)
Salmonella enterica subsp. enterica serovar Infantis (S. Infantis) isolates were found to have a multi-drug resistance profile (kanamycin, streptomycin, nalidixic acid, tetracycline, sulfonamide, and sometimes to ampicillin) and high prevalence (91%) in Turkish poultry in our previous studies. To investigate the mechanism behind multi-drug antimicrobial resistance (AMR) and high prevalence in Turkish poultry, 23 of the isolates were sequenced for comparative genomic analyses including: SNP-based comparison ...
Genome-wide analysis of gene expression profiling revealed that COP9 signalosome is essential for correct expression of Fe homeostasis genes in Arabidopsis
Eroğlu, Seçkin (Springer Science and Business Media LLC, 2017-10-01)
In plant cells, either excess or insufficient iron (Fe) concentration triggers stress responses, therefore it is strictly controlled. Proteasome-mediated degradation through ubiquitination of Fe homeostasis proteins has just become the focus of research in recent years. Deactivating ubiquitin ligases, COP9 signalosome has a central importance in the translational control of various stress responses. The aim of the study was to investigate COP9 signalosome in Fe deficiency response of Strategy I plants. In s...
Citation Formats
A. K. YAGIZ, C. YAVUZ, M. Naeem, S. DAS DANGOL, and E. Aksoy, Genome Editing for Nutrient Use Efficiency in Crops. 2022.