Show/Hide Menu
Hide/Show Apps
Logout
Türkçe
Türkçe
Search
Search
Login
Login
OpenMETU
OpenMETU
About
About
Open Science Policy
Open Science Policy
Open Access Guideline
Open Access Guideline
Postgraduate Thesis Guideline
Postgraduate Thesis Guideline
Communities & Collections
Communities & Collections
Help
Help
Frequently Asked Questions
Frequently Asked Questions
Guides
Guides
Thesis submission
Thesis submission
MS without thesis term project submission
MS without thesis term project submission
Publication submission with DOI
Publication submission with DOI
Publication submission
Publication submission
Supporting Information
Supporting Information
General Information
General Information
Copyright, Embargo and License
Copyright, Embargo and License
Contact us
Contact us
Modeling stochastic hybrid systems with memory with an application to immune response of cancer dynamics
Download
index.pdf
Date
2014
Author
Gökgöz, Nurgül
Metadata
Show full item record
Item Usage Stats
179
views
133
downloads
Cite This
Dynamics of cancer involve some complex interactions like immune system responses. Many different models of immune response to tumor growth exist in the literature. Most of the available models are first principles models which have problems in determining the model parameters. For potential use in treatment planning, a model should be able to adopt to subject by subject variability and unknown factors. However, such an approach for a complicated problem like cancer dynamics has some drawbacks. First of all, there exist some unknown factors. Secondly, models with fixed parameters do not allow considering subject-by-subject variability. An alternative approach to this problem is inferring the parameters and determining system behaviour from empirical observation. In inferential modeling case, we first select a model class and infer the parameters from the observations. For this purpose, we used hybrid systems that are suitable for inferential modeling due to their analytical and computational advances. For many biological and physiological systems, the behaviour of system and its responses depend on whole history rather than a combination of historical events. We utilize and further develop hybrid systems with memory to have a more realistic representation. Finally, we also incorporate stochastic calculus in our model to include uncertainities and random perturbation.
Subject Keywords
Cancer
,
Tumors
,
Tumors
,
Immune system
,
Hybrid systems
URI
http://etd.lib.metu.edu.tr/upload/12616927/index.pdf
https://hdl.handle.net/11511/23387
Collections
Graduate School of Applied Mathematics, Thesis
Suggestions
OpenMETU
Core
Multiscale tumor modeling
Ünsal, Serbülent; Acar, Aybar Can; Department of Health Informatics (2014)
Cancer’s complex behavior decreases success rates of the cancer therapies. The usual steps cancer therapy are, deciding phase of the cancer and planing the therapy according to medical guidelines and there is no room or chance for personalized medicine. Simulation systems that use patient specific data as input and up-to-date scientific evidence as business rules has chance to help clinicians for evidence based personalized medicine practice.In this study our aim is creating a basic model to guide researche...
DETECTION OF CANCER STEM CELLS IN MICROSCOPIC IMAGES BY USING REGION COVARIANCE AND CODIFFERENCE METHOD
Oguz, Oguzhan; Muenzenmayer, Christian; Wittenberg, Thomas; ÜNER, AYŞEGÜL; ÇETİN, AHMET ENİS; Atalay, Rengül (2015-10-30)
This paper presents a cancer stem cell detection method using region covariance and codifference method. It focuses on detection of Cancer Stem Cell (CSC) in microscopic images which are stained with CD13 marker. Features of CSC images are extracted by using both covariance method and its multiplication free version codifference method and these features are fed into a Support Vector Machine (SVM) for classification. Experimental results are presented.
Characterization and prediction of protein interfaces to infer protein-protein interaction networks
Keskin, Ozlem; Tunçbağ, Nurcan; GÜRSOY, Attila (2008-04-01)
Complex protein-protein interaction networks govern biological processes in cells. Protein interfaces are the sites where proteins physically interact. Identification and characterization of protein interfaces will lead to understanding how proteins interact with each other and how they are involved in protein-protein interaction networks. What makes a given interface bind to different proteins; how similar/different the interactions in proteins are some key questions to be answered. Enormous amount of prot...
Capture of rare circulating tumor cells from blood on bio-activated oxide surface inside microfluidic channels
Ateş, Hatice Ceren; Külah, Haluk; Özgür, Ebru; Department of Micro and Nanotechnology (2018)
Isolation and characterization of circulating tumor cells (CTCs) have important clinical significance in terms of prognosis and early detection of response to treatment. Moreover, downstream characterization of CTCs may help better patient stratification and therapy guidance. However, CTCs are extremely rare (~10 CTCs/1010 peripheral blood cells) and highly sensitive, and specific technology is required for their isolation. Rapidly developing microfluidic technologies offer variety of advantages in rare cel...
Integration of topological measures for eliminating non-specific interactions in protein interaction networks
BAYIR, Murat Ali; GUNEY, Tacettin Dogacan; Can, Tolga (Elsevier BV, 2009-05-28)
High-throughput protein interaction assays aim to provide a comprehensive list of interactions that govern the biological processes in a cell. These large-scale sets of interactions, represented as protein-protein interaction networks, are often analyzed by computational methods for detailed biological interpretation. However, as a result of the tradeoff between speed and accuracy, the interactions reported by high-throughput techniques occasionally include non-specific (i.e., false-positive) interactions. ...
Citation Formats
IEEE
ACM
APA
CHICAGO
MLA
BibTeX
N. Gökgöz, “Modeling stochastic hybrid systems with memory with an application to immune response of cancer dynamics,” Ph.D. - Doctoral Program, Middle East Technical University, 2014.