Electronic excited states of the CP29 antenna complex of green plants: A model based on exciton calculations

Download
2000-01-01
Iseri, EI
Albayrak, D
Gulen, D
We have suggested a model for the electronic excited states of the minor plant antenna, CP29, by incorporating a considerable part of the current information offered by structure determination, site-directed mutagenesis, and spectroscopy in the modeling. We have assumed that the electronic excited states of the complex have been decided by the chlorophyll-chlorophyll (Chl) and Chl-protein interactions and have modeled the Coulombic interaction between a pair of Chls in the point-dipole approximation and the Chl-protein interactions are treated as empirical fit parameters. We have suggested the Q(y) dipole moment orientations and the site energies for all the chlorophylls in the complex through a simultaneous simulation of the absorption and linear dichroism spectra. The assignments proposed have been discussed to yield a satisfactory reproduction of all prominent features of the absorption, linear and circular dichroism spectra as well as the key spectral and temporal characteristics of the energy transfer processes among the chlorophylls. The orientations and the spectral assignments obtained by relatively simple exciton calculations have been necessary to provide a good point of departure for more detailed treatments of structure-function relationship in CP29. Moreover, it has been discussed that the CP29 model suggested can guide the studies for a better understanding of the structure-function relationship in the major plant antenna, LHCII.
JOURNAL OF BIOLOGICAL PHYSICS

Suggestions

Optical characteristics of Bi12SiO20 single crystals by spectroscopic ellipsometry
Isik, M.; Delice, S.; Nasser, H.; Hasanlı, Nızamı; Darvishov, N. H.; Bagiev, V. E. (Elsevier BV, 2020-12-01)
Structural and optical characteristics of Bi12SiO20 single crystal grown by the Czochralski method were investigated by virtue of X-ray diffraction (XRD) and spectroscopic ellipsometry measurements. XRD analysis indicated that the studied crystal possesses cubic structure with lattice parameters of a = 1.0107 nm. Spectral dependencies of several optical parameters like complex dielectric constant, refractive index, extinction and absorption coefficients were determined using ellipsometry experiments perform...
Energy Harvesting Through Lumped Elements Located on Metamaterial Absorber Particles
Gunduz, Ozan T.; Sabah, Cumali (2015-09-09)
We propose and examine an enhanced version of a multi-band metamaterial absorber for an energy harvesting application. The numerical results of the multi-band absorption characteristics of no-load conditions are presented and compared with the loading conditions. At most % 50 of the incoming wave energy whose correspondence is 0.25 Watt is converted to real power at the resistive loads at 5.88 GHz by the usage of 2000 ohms loads. In order to evaluate the harvesting efficiency, three different types of effic...
Estimation of Articulatory Trajectories Based on Gaussian Mixture Model (GMM) With Audio-Visual Information Fusion and Dynamic Kalman Smoothing
ÖZBEK, İbrahim Yücel; Hasegawa-Johnson, Mark; Demirekler, Mübeccel (Institute of Electrical and Electronics Engineers (IEEE), 2011-07-01)
This paper presents a detailed framework for Gaussian mixture model (GMM)-based articulatory inversion equipped with special postprocessing smoothers, and with the capability to perform audio-visual information fusion. The effects of different acoustic features on the GMM inversion performance are investigated and it is shown that the integration of various types of acoustic (and visual) features improves the performance of the articulatory inversion process. Dynamic Kalman smoothers are proposed to adapt t...
Hydrodynamic approach for modelling transport in quantum well device structures
Beşikci, Cengiz; Sen, O (IOP Publishing, 1998-09-07)
A semiclassical approach for modelling electron transport in quantum well structures is presented. The model is based on the balance equations governing the conservation of particle density, momentum and energy with Monte Carlo (MC) generated transport parameters. Three valleys of the conduction band, size quantization in the Gamma valley, and the lowest two subbands in the quantum well are considered by taking the detailed intersubband dynamics into account. The transport parameters of the model are extrac...
Electronic structure of carbon nanotubes: AM1-RHF calculations
Erkoç, Şakir; Turker, L (Elsevier BV, 1999-07-01)
We have investigated the electronic structure of optimized open-ended single-wall carbon nanotubes with armchair and zigzag geometries. The calculations were performed using AM1-RHF semiempirical molecular orbital method. It has been found that the density of states of the zigzag model is more sensitive to the tube size than that of the armchair model.
Citation Formats
E. Iseri, D. Albayrak, and D. Gulen, “Electronic excited states of the CP29 antenna complex of green plants: A model based on exciton calculations,” JOURNAL OF BIOLOGICAL PHYSICS, pp. 321–339, 2000, Accessed: 00, 2020. [Online]. Available: https://hdl.handle.net/11511/66830.