Use of open linked data in bioinformatics space: A case study

Date

2013-01-01

Author

Çelebi, Remzi
GÜMÜŞ, ÖZGÜR
Aydın Son, Yeşim

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This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License.

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In the life sciences, semantic web can support many aspects of bio- and health informatics, with exciting applications appearing in areas ranging from plant genetics to drug discovery. Using semantic technologies with open linked data, provides two kinds of advantages: ability to search multiple datasets through a single framework and ability to search relationships and paths of relationships that go across different datasets. The Bio2RDF project creates a network of coherently linked data across the biological databases. As part of the Bio2RDF project, an integrated bioinformatics warehouse on the semantic web is built. In this paper, a use case with a query for multiple distant data sources which are semantically available through Bio2RDF is defined. The validation of the results by traditional search techniques and discussion for future directions is presented. © 2013 IEEE.

Subject Keywords

Semantic Web, Bio2RDF, SPARQL, Open Linked Data, Bioinformatics

URI

https://hdl.handle.net/11511/69789

DOI

https://doi.org/10.1109/hibit.2013.6661679

Collections

Graduate School of Informatics, Conference / Seminar

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Citation Formats

R. Çelebi, Ö. GÜMÜŞ, and Y. Aydın Son, “Use of open linked data in bioinformatics space: A case study,” 2013, Accessed: 00, 2020. [Online]. Available: https://hdl.handle.net/11511/69789.