Analysis and characterization of the pichia pastoris secretome for pharmaceutical protein production

Download
2019
Kırlı, Hatice Pınar
Human growth hormone (hGH) is used for the treatment of many diseases like short stature in children. It is generally purified by using affinity chromatography. Due to the high cost of affinity chromatography, other chromatographic techniques have been investigated for purification of recombinant human growth hormone (rhGH). The aim of this work was to explore chromatographic purification protocols for rhGH from the secretome of Pichia pastoris. First, the entire secretome was examined by 2-D gel electrophoresis. A major 4 unique proteins apart from rhGH were found in the secretome. The molecular weights of the other proteins were found to range between 20 and 140 kDa. The isoelectric points of most of the proteins in secretome were determined to vary between 4.4 and 5.7. To putatively identify the proteins in the secretome, the secretome of P. pastoris from the literature was analyzed using the software JVirGel 2.0, which forms a virtual 2D gel image. By comparing the virtual image with the experimental gel results, the possible identities for the experimental bands were suggested as the paf1 complex component, cell wall protein DAN4, protein phosphatase, lectin-like protein, putative glucanases, protein kinase, aspartic proteinase 3, repressible acid phosphatase. After the characterization of the secretome proteins, the purification of rhGH was investigated using desalting, size exclusion and anion exchange chromatography. In the desalting column, proteins were separated from impurities like salts and peptide parts. It was found that using size exclusion chromatography, the rhGH was partially purified from proteins with molecular weight lower than 15 kDa. It was predicted that rhGH interacts with other proteins and forms agglomerates. Although partial purification of rhGH is possible by using consecutive usage of two chromatographic techniques, the separation yield is low, since sequential chromatographic techniques probably caused substantial protein loss. As the final investigation of this work, secretomes produced by two different promoters were compared for purification of rhGH. Fractions of size exclusion and anion exchange chromatography were analyzed by SDS-PAGE. It was found that the secretomes were mostly similar except for the fact that the rhGH concentration of the secretome with the modified GAP promoter was higher than that for the secretome with modified AOX. In conclusion, rhGH was partially purified by using size exclusion and anion exchange chromatography.

Suggestions

Expression System for Recombinant Human Growth Hormone Production from Bacillus subtilis
ÖZDAMAR, HASAN TUNÇER; Sentuerk, Birguel; Yilmaz, Oezge Deniz; Calik, Guezide; Celik, Eda; Çalık, Pınar (2009-01-01)
We demonstrate for the first time, an expression system mimicking serine alkaline protease synthesis and secretion, producing native form of human growth hormone (hGH) from Bacillus subtilis. A hybrid-gene of two DNA fragments, i.e., signal (pre-) DNA sequence of B. licheniformis serine alkaline protease gene (subC) and cDNA encoding hGH, were cloned into pMK4 and expressed under deg-promoter in B. subtilis. Recombinant-hGH (rhGH) produced by B. subtilis carrying pMK4::pre(subC)::hGH was secreted. N-termina...
Defined and complex medium based feeding strategy development for recombinant human growth hormone production by P. pastoris under GAP promoter
Hoxha, Bebeta; Çalık, Pınar; Özdamar, Tunçer H.; Department of Chemical Engineering (2016)
The objective of this study is to investigate different feeding strategies leading to higher recombinant human growth hormone (rhGH) production by Pichia pastoris, driven under constitutive promoter of the glyceraldehyde-3-phosphate dehydrogenase gene. rhGH production took place in a pilot bioreactor where glucose and molasses were examined as carbon sources. For batch phase, which is the first production phase of the reactor, all experiments share the same characteristics where glycerol was utilized as the...
Biotechnological modification of steroidal structures
Erkılıç, Umut; Demir, Ayhan Sıtkı; Department of Biotechnology (2008)
Steroids are important biological regulators existing in hormones which are used to control metabolism of the body. There are widespread applications in the pharmaceutical industry. Drugs of steroid nature - anti-inflammatory and antiallergic corticosteroids, diuretics, anabolics, androgens, gestagens, contraceptives, antitumor medications, etc. - are now widely used in human and veterinary medicine. Nowadays, biotechnological modifications of steroids are preferred over chemical modifications as a green ch...
Comparison of human growth hormone production performance of two different metabolically engineered Pichia pastoris
Zerze, Halime Gül; Çalık, Pınar; Department of Chemical Engineering (2012)
Recombinant human growth hormone (rhGH) production levels and bioprocess characteristics were investigated for two recombinant Pichia pastoris strains. In the first part of the study, feeding strategies for semi-batch operations were developed in pilot scale bioreactors to improve rhGH production under strong methanol inducible alcohol oxidase I (AOX1) promoter, by previously constructed P. pastoris M13 strain (pPICZαA::hGH-Mut+). Three different methanol feeding strategies together with mannitol co-feeding...
Evaluation of methylation profiles of an epidermal growth factor receptor gene in a head and neck squamous cell carcinoma patient group
Mutlu, M.; Mutlu, Pelin; Azarkan, S.; Baylr, Ö.; Öcal, B.; Saylam, G.; KORKMAZ, MEHMET HAKAN (2021-03-23)
Upregulation of the epidermal growth factor receptor (EGFR) gene has shown an important impact on the development of head and neck cancers due to its important regulation role on multiple cell signaling pathways. The aim of this study was to investigate the methylation pattern of the promoter region of the EGFR gene between head and neck squamous cell carcinoma (HNSCC) patients and a control group. Forty-seven unrelated HNSCC patients, clinically diagnosed at the Department of Otorhinolaryngology, Dlşkapl Y...
Citation Formats
H. P. Kırlı, “Analysis and characterization of the pichia pastoris secretome for pharmaceutical protein production,” Thesis (M.S.) -- Graduate School of Natural and Applied Sciences. Chemical Engineering., Middle East Technical University, 2019.