The evolutionary divergence of Pinus nigra subsp pallasiana and its varieties based on noncoding trn regions of chloroplast genome

2014-01-01
Gulsoy, Aysun Demet
Gulsoy, Ali Murat
Cengel, Burcu
Kaya, Zeki
The Anatolian black pine [Pinus nigra Arnold subsp. pallasiana (Lamb.) Holmboe var. pallasiana] is one of the subspecies of European black pine, growing naturally as a widespread mid-elevation species in the southern, western, and northern Anatolian Mountains of Turkey. Three well-recognized varieties [var. pallasiana, var. fastigiata Businsky with pyramidal form, and var. seneriana (Saatcioglu) Yalt. with globular-shaped crown with multiple stems] occur naturally, but the studies on them are very limited. These 3 varieties of Anatolian black pine were sampled in natural stands where they coexist to determine evolutionary divergence in the species as well as its evolutionary relationships with other related pine species. A total of 71 trees were sampled to assess molecular divergence patterns in the species by using 3 noncoding trn regions (trnL, trnL-F, and trnV) of chloroplast DNA. The results indicated that trnL and trnV regions were conserved among Anatolian black pine taxa, but the trnL-F region revealed 3 parsimony-informative sites. The sequence diversity in the trnL-F region was useful to separate both var. seneriana and var. fastigiata from Anatolian black pine as well as this species from the other members of section Pinus L. The genetic divergence between 2 varieties (0.0018-0.0027) was greater than the divergence between varieties and Anatolian black pine (0.0009-0.0018). The nucleotide sequences of trn regions obtained from seed megagametophytes of both Anatolian black pine and var. seneriana stands from the same location did not show any divergence, while the trn sequences from needle tissues of var. seneriana diverged from the trn sequences of Anatolian black pine. This divergence suggests that var. seneriana may have evolved as a result of a point mutation in a gene with pleiotropic effects involved in apical dominancy of Anatolian black pine, but this has to be explored further with future studies.
TURKISH JOURNAL OF BOTANY

Suggestions

Genetic composition of four marginally located Anatolian black pine (Pinus nigra subsp. pallasiana) populations determined by SSR markers
Aygün, Sıla; Kaya, Zeki; Department of Biology (2018)
Anatolian black pine (Pinus nigra Arnold subsp. pallasiana (Lamb.) Holmboe) is one of the most economically and ecologically important coniferous tree species of Turkey. Global climate change is obviously going to affect distribution and development of forest tree species and the marginal populations will be the most vulnerable ones. Since these populations are located in outer borders of their natural distribution area, they are expected to have original genetic makeup shaped by unsuitable living condition...
The phylogenetic relationship between populations of marginally and sympatrically located Pinus halepensis Mill. and Pinus brutia Ten. in Turkey, based on the ITS-2 region
Tozkar, C. Ozge; Önde, Sertaç; Kaya, Zeki (2009-01-01)
Turkish red pine (Pinus brutia) is a widespread and important forest tree species in Turkey, occurring mainly in southern, western, and northwestern Turkey, while the natural occurrence of Aleppo pine (Pinus halepensis) is restricted to 2 locations and is found sympatrically with Turkish red pine. In the present study sympatric populations of both species from Mugla and Adana provinces in Turkey were sampled, and the internal transcribed spacer 2 (ITS-2) region of ribosomal DNA was comparatively studied wit...
The pattern of genetic variation in Pinus nigra subspecies pallasiana natural populations from the Kazdagi and Bolkar mountains, Turkey: Implications for in situ gene conservation
Kaya, Zeki; Cengel, BN; Velioglu, E; Tolun, GG (1999-01-01)
Eleven populations of black pine (Pinus nigra Arnold subspecies pallasiana) were studied at 17 polymorphic isoenzyme gene loci. The mean number of alleles per locus (A) was 1.6. Observed heterozygosity (H-obs) was the lowest in the Gurgendag population from Kazdagi (0.119) and the highest in the Qamhyayla population from Bolkar Mountains (0.287). The expected heterozygosities (H-exp) ranged from 0.296 (Asar, from Kazdagi) to 0.181 (Cehennemdere, from Bolkar Mountains). F-ST was 0.0592 for Kazdagi and 0.0358...
Marjinal Karaçam (Pinus nigra Subsp. Pallasiana) Populasyonlarında Genetik Çeşitlilik ve Akrabalık Düzeyi: Bu Tür Populasyonlarla Yapılacak Ağaçlandırmaların Genetik Uyum Potansiyeli
Kaya, Zeki; Çengel, Burcu; Aygün, Sıla(2018-04-15)
Anadolu karaçamı (Pinus nigra Arnold subsp. pallasiana (Lamb.) Holmboe) geniş yayılışı ile ekonomik ve ekolojik açıdan ülkemizin en önemli ibreli orman ağacı türlerinden birisidir. İç Anadolu steplerinde kalıntı orman olarak kalan marjinak karaçam populasyonları değişen iklim koşullarından en fazla etkilenecek populasyonlar olduğu düşünülmektedir. Çünkü bu populasyonlar, türün yetişme alanının uç sınırlarında yer alır ve orijinal bir genetik yapıya sahip oldukları varsayılır. Orman ekosistemlerinin geleceği...
Pattern and magnitude of genetic diversity in Pinus nigra ARNOLD subspecies pallasiana populations from Kazdagi: Implications for in situ conservation
Cengel, Burcu; Velioğlu, Ercan; Tolun, Ayper A; Kaya, Zeki (2000-01-01)
To determine the genetic structure of black pine (Pinus nigra ARNOLD subspecies pallasiana), populations sampled from Kazdag (Eybekli, Asar, Katrandag, Kalklm, Gurgendag, Kapidag, Mihlidere). Isozymes from 16 enzyme systems were investigated from haploid female megagametophytes by starch gel electrophoresis.
Citation Formats
A. D. Gulsoy, A. M. Gulsoy, B. Cengel, and Z. Kaya, “The evolutionary divergence of Pinus nigra subsp pallasiana and its varieties based on noncoding trn regions of chloroplast genome,” TURKISH JOURNAL OF BOTANY, pp. 627–636, 2014, Accessed: 00, 2020. [Online]. Available: https://hdl.handle.net/11511/35157.