Graduate School of Informatics

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Recent Submissions

Exploring the genetic landscape of COVID-19 susceptibility and severity among patients in Türkiye Er, Ahmet Gorkem; Çakır, Yavuzhan; Er, Berrin; Burduroğlu, Hüseyin Cahit; Çakmak, Mehmet; ÖZIŞIK, LALE; DURUSU TANRIÖVER, MİNE; Topeli, Arzu; Aydın Son, Yeşim; Ünal, Serhat (2026-12-01) Background: One of the most challenging factors for clinicians in managing COVID-19 has been differences in the clinical course. To investigate the parameters associated with severe disease in detail, along with examining ...
SOT-GLP: Sparse optimal transport guided local-global prompt learning Kizaroglu, Deniz; Kucuktas, Ulku Tuncer; Cakmakyurdu, Emre; Temizel, Alptekin (2026-09-01) Few-shot adaptation of vision-language models (VLMs) like CLIP typically relies on learning textual prompts matched to global image embeddings. Recent works extend this paradigm by incorporating local image-text alignment ...
A robust machine learning framework for predicting the higher heating value of poultry litter using proximate analysis Eren, Beytullah; Uzun, Suleyman; Özdemir, Serkan (2026-08-01) Accurate estimation of the higher heating value (HHV) of poultry litter is critical for its valorization as a renewable energy feedstock. However, the heterogeneity of poultry litter and data scarcity pose challenges for p...
Insightful problem solving and social learning in children's tool making: Exploring the role of napping, night sleep, age, and gender Gönül, Gökhan; Karabulut, Anıl; Hohenberger, Annette (2026-07-01) Insight and innovation are two crucial components of our problem-solving capacity to create novel tools. In this study, we explored the possible contribution of task break (napping or wakeful), age (3-to-5-year-olds), gend...
Non-coding RNAs as biomarkers and therapeutic targets in pancreatic cancer: Clinical implications and translational perspectives Carretero-Fernández, María; Ruíz-Durán, Lucía; Uysal-Onganer, Pinar; Daniel, Neil; Yiannakopoulou, Eugenia; Otlu Sarıtaş, Burçak; García-Verdejo, Francisco José; López-López, José Antonio; Ortega Sánchez, Francisco Gabriel; Bonilla, Marco; Mesa, Francisco; Reyes-Zurita, Fernando; Gutiérrez-Bautista, Juan Francisco; González-Olmedo, Carmen; Fernández-Baldo, Martín A.; Campa, Daniele; Sánchez-Rovira, Pedro; Hughes, David; Cabrera-Serrano, Antonio José; Sainz, Juan (2026-06-01) Pancreatic cancer remains one of the most lethal malignancies, largely due to late diagnosis, marked tumor heterogeneity, and profound resistance to therapy. Beyond recurrent alterations in protein-coding genes, growing ev...
Agent-Based Simulation for Meal Micro-Delivery Services: Modeling, Simulation, and Dispatch Strategy Evaluation Özdemir, Serkan; Yfantis, Lampros; Rodriguez Correia, Gonçalo Homem de Almeida; Azadeh, Shadi Sharif (2026-05-21)
Directed acyclic graphs for causal inference of the impact of maternal and child helminth infections on child growth Gabain, Isobel L.; Davies-Kershaw, Hilary; Rosenstock, Todd S.; Yet, Barbaros; Rudge, James W.; Webster, Joanne P. (2026-05-01) As of 2025, an estimated 150.2 million children under 5 years globally were stunted-falling more than two standard deviations below the World Health Organization (WHO) Child Growth Standards median. Helminth infections rep...
Deep sequence models for predicting average shear wave velocity from strong motion records Yilmaz, Baris; Akagündüz, Erdem; Tileylioglu, Salih (2026-05-01)
Generative Modeling of Strong Ground Motion Records Using Attention-Based Variational Autoencoders Hekimoğlu, Nevin Şehbal; Akagündüz, Erdem; Tileylioğlu, Salih; Department of Modeling and Simulation (2026-4-30) Reliable characterization of strong ground motion variability is fundamental at every stage of modern seismic hazard assessment. However, the empirical record remains sparse for many critical combinations of source, path, ...
The Evolutionary Transition From Intentional to Overt Communication: The Role of Script Recognition Sievers, Christine; Alexander, Cameron; Taylor, Derry; Gönül, Gökhan; Clement, Fabrice; Zuberbuhler, Klaus; Glock, Hans-Johann (2026-04-23) Human communication is generally overt: We address each other with verbal cues, use eye contact, and point for each other, all to be understood and avoid misunderstandings. What are the cognitive underpinnings and evolutio...
GENERATING PARKINSONIAN LFP SIGNALS WITH CONDITIONAL DIFFUSION MODEL Ekiz, Merve; Özkurt, Tolga Esat; Department of Data Informatics (2026-4-17) Local field potentials (LFP) are brief, summed electrical signals that reflect synchronous neuronal activity and are produced in nerves and other tissues, such as neurons. Furthermore, in the detection of Parkinson's disea...
MULTI-VIEW MULTIMODAL BEV PERCEPTION FOR CENTERLINE-CENTRIC ROAD TOPOLOGY UNDERSTANDING WITH TRANSFORMER DECODERS Kalfaoğlu, Muhammet Esat; Temizel, Alptekin; Department of Modeling and Simulation (2026-4-16) This thesis studies transformer-based road topology understanding with centerline-centric representations and their relations to traffic elements. The core problem is to jointly model geometry and topology in complex urban...
ANALYSIS AND COMPARISON OF STATIC APPLICATION SECURITY TESTING TOOLS AND COMMON TOOL MECHANISMS Seren, Ata; Tezcan, Cihangir; Department of Cybersecurity (2026-4-14) Static Application Security Testing (SAST) tools play a critical role in identifying vulnerabilities during software development which enables early-stage security and mitigate security risks in production. However, their ...
MUTATION-CENTRIC GRAPH NETWORKS: INTEGRATING LOCAL AND DISTAL GENOMIC CONTEXT Hüseynov, Ramal; Otlu Sarıtaş, Burçak; Department of Bioinformatics (2026-4-13) Somatic mutations drive the transformation of normal cells into cancer, yet the vast majority occur within non-coding regions, where their functional consequences remain poorly under- stood. A key challenge is that non-cod...
EXPLORING HUMAN FACTORS IN LARGE LANGUAGE MODEL-ASSISTED SOFTWARE REQUIREMENTS SPECIFICATION Kocakaya, Başak Düşün; Özcan Top, Özden; Yürüm, Ozan Raşit; Department of Information Systems (2026-4-3) Large Language Models (LLMs) are being integrated into multiple phases of the software development life cycle, from requirements specification to maintenance. LLMs' technical benefits on software development, such as accel...
Experimental and Finite Element Investigation of Bolted Connections in GFRP Composite Cross-Arms for Energy Distribution Towers Günel Kılıç, Banu; Baran, Eray (2026-04-01) This study investigates bolted connections in open-section glass fiber-reinforced polymer (GFRP) composite cross-arms for 34.5 kV energy distribution towers. Six GFRP angle sections (L50 × 5 to L120 × 12) were tested under...
Hybrid Intelligence Feedback: A Model Proposal and Preliminary Study Coskun, Atakan; Er, Erkan (2026-04-01) Background: Although existing studies suggest that AI chatbots hold potential as feedback tools in educational settings, there remains a significant gap in the literature regarding pedagogically grounded frameworks or guid...
Surface Roughness Dataset for Fused Filament Fabrication Erkan, Engin Deniz; Sürer, Elif; Yaman, Ulaş (2026-03-01) Surface quality remains one of the key challenges in fused filament fabrication (FFF), as surface roughness is influenced by multiple interacting process parameters and geometric factors. Because roughness cannot be reliab...
Interactive 3D visualization of surface roughness predictions in additive manufacturing: A data-driven framework Erkan, Engin Deniz; Sürer, Elif; Yaman, Ulaş (2026-03-01) Surface roughness in Material Extrusion Additive Manufacturing varies across a part and is difficult to anticipate during process planning because it depends on both printing parameters and local surface inclination, which...
DS PRO-S: A Success Assessment Model and Methodology for Data Science Projects Gökay, Gonca Tokdemir; GÖKALP AYDIN, EBRU; Eren, Pekin Erhan (2026-03-01) There is a persistent paradox in the data science domain: despite the growing recognition of data as a strategic asset, many projects designed to leverage its value still suffer from high failure rates. To address this cha...

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